########################################
# Program: needle
# Rundate: Thu 11 Feb 2016 07:09:34
# Commandline: needle
#    -auto
#    -stdout
#    -asequence emboss_needle-I20160211-070933-0105-17031148-oy.asequence
#    -bsequence emboss_needle-I20160211-070933-0105-17031148-oy.bsequence
#    -datafile EDNAFULL
#    -gapopen 10.0
#    -gapextend 0.5
#    -endopen 10.0
#    -endextend 0.5
#    -aformat3 pair
#    -snucleotide1
#    -snucleotide2
# Align_format: pair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: KP113546.1
# 2: 2976
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 362
# Identity:     309/362 (85.4%)
# Similarity:   309/362 (85.4%)
# Gaps:          30/362 ( 8.3%)
# Score: 1462.0
# 
#
#=======================================

KP113546.1         1 --------------GGCCCCAAGGAAGCAGCTGGCCACCAAGGCAGCTCG     36
                                   ||||||.|||||||||||||||||||||||||||||
2976               1 tcTACCGGagGCAAGGCCCCCAGGAaGCAGCTGGCCACCAAGGCAGCTCG     50

KP113546.1        37 CAAGAGTGCCCCAGCNACTGGTGGTGTCAAGAAGCCCCATCGTTACAGGC     86
                     ||||||||||||||| ||||||||.||.||||||||||||||||||||||
2976              51 CAAGAGTGCCCCAGCAACTGGTGGAGTGAAGAAGCCCCATCGTTACAGGC    100

KP113546.1        87 CTGGCACAGTGGCTCTCCGTGAGATCCGTCGTTACCAGAAGAGCACCGAG    136
                     ||||||||||.|||||.|||||||||||||||||||||||||||||.|||
2976             101 CTGGCACAGTTGCTCTGCGTGAGATCCGTCGTTACCAGAAGAGCACAGAG    150

KP113546.1       137 CTGCTGATCAGGAAGCTGCCCTTCCAGCGTCTGGTCCGTGAGATCGCCCA    186
                     |||||||||.|.||||||||.||||||||||||||.||||||||||||||
2976             151 CTGCTGATCCGCAAGCTGCCATTCCAGCGTCTGGTGCGTGAGATCGCCCA    200

KP113546.1       187 GGACTTCAAGACTGACCTGCGCTTCCAGAGCTCCGCCGTCATGGCCCTGC    236
                     |||||||||||||||||||||||||||||||||.||.||||||||..|||
2976             201 GGACTTCAAGACTGACCTGCGCTTCCAGAGCTCTGCTGTCATGGCTTTGC    250

KP113546.1       237 AGGAGGCTAGCGAGGCCTACCTGGTCGGTCTGTTCGAGGACACCAACCTG    286
                     ||||||||||||||||.||||||||.||.||||||||||||||||||.||
2976             251 AGGAGGCTAGCGAGGCTTACCTGGTTGGCCTGTTCGAGGACACCAACTTG    300

KP113546.1       287 TGCGCCATCCATGCCAAGCGTGTCACNATNATGCCNAAGGATATGT----    332
                     |||||||||||.|||||||||||||| || ||||| ||||||||||    
2976             301 TGCGCCATCCACGCCAAGCGTGTCACtATtATGCCyAAGGATATGTCATA    350

KP113546.1       333 ------------    332
                                 
2976             351 GCTGTTTCCdga    362


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